Package: ssMousetrack 1.1.6

ssMousetrack: Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan

Estimates previously compiled state-space modeling for mouse-tracking experiments using the 'rstan' package, which provides the R interface to the Stan C++ library for Bayesian estimation.

Authors:Antonio Calcagnì, Massimiliano Pastore

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ssMousetrack.pdf |ssMousetrack.html✨
ssMousetrack/json (API)
NEWS

# Install 'ssMousetrack' in R:

install.packages('ssMousetrack', repos = c('https://antcalcagni.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/antcalcagni/ssmousetrack/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

congruency - Mouse-tracking experiment of a memory task
language - Mouse-tracking experiment of a lexical decision task

On CRAN:

bayesian-data-analysis mouse-tracking state-space-model cpp

2.70 score 8 scripts 176 downloads 8 exports 58 dependencies

Last updated 12 days agofrom:14c04a9202. Checks:1 OK, 11 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 16 2025
R-4.5-win-x86_64	NOTE	Mar 16 2025
R-4.5-mac-x86_64	NOTE	Mar 16 2025
R-4.5-mac-aarch64	NOTE	Mar 16 2025
R-4.5-linux-x86_64	NOTE	Mar 16 2025
R-4.4-win-x86_64	NOTE	Mar 16 2025
R-4.4-mac-x86_64	NOTE	Mar 16 2025
R-4.4-mac-aarch64	NOTE	Mar 16 2025
R-4.4-linux-x86_64	NOTE	Mar 16 2025
R-4.3-win-x86_64	NOTE	Mar 16 2025
R-4.3-mac-x86_64	NOTE	Mar 16 2025
R-4.3-mac-aarch64	NOTE	Mar 16 2025

Exports:check_prior compute_D evaluate_ssm generate_data generate_design generate_Z prepare_data run_ssm

Dependencies:abind backports BH boot callr checkmate CircStats cli colorspace cowplot desc distributional dtw fansi farver generics ggplot2 glue gridExtra gtable inline isoband labeling lattice lifecycle loo magrittr MASS Matrix matrixStats mgcv munsell nlme numDeriv pillar pkgbuild pkgconfig posterior processx proxy ps QuickJSR R6 RColorBrewer Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tensorA tibble utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bayesian State-Space Modeling of Mouse-Tracking Experiments Via Stan	ssMousetrack-package ssMousetrack
Check prior distributions	check_prior
Compute the matrix of distances D for kappa parameters	compute_D
Mouse-tracking experiment of a memory task	congruency
Evaluate the adequacy of the state-space model to reproduce the observed data	evaluate_ssm
Generate datasets according to the model structure	generate_data
Generate the design of a mouse-tracking experiment	generate_design
Generate a row-wise stacked boolean partition matrix of JI rows and K columns	generate_Z
Mouse-tracking experiment of a lexical decision task	language
Prepare mouse-tracking trajectories for state-space modeling via Stan	prepare_data
State-space modeling of mouse-tracking trajectories via Stan	run_ssm